PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID RrC1850_p4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
Family ERF
Protein Properties Length: 273aa    MW: 30847.8 Da    PI: 5.2365
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
RrC1850_p4genomeMSUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP269.75.3e-2291141256
         AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                  y+GVr+++ +g+WvAeIr p++   r+r +lg+f+taeeAaka+++a+ kl+ge
  RrC1850_p4  91 LYRGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFDTAEEAAKAYDQAAYKLRGE 141
                 59******9.**********965...5**************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.09E-3590149No hitNo description
SMARTSM003801.1E-3691154IPR001471AP2/ERF domain
PROSITE profilePS5103223.57891148IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-3291149IPR001471AP2/ERF domain
SuperFamilySSF541713.47E-2391149IPR016177DNA-binding domain
PRINTSPR003671.5E-1192103IPR001471AP2/ERF domain
PfamPF008472.4E-1592141IPR001471AP2/ERF domain
PRINTSPR003671.5E-11114130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MAAIDMFNSS TDLSDPFKEE PMKVLKPFKN SLPPVPNTIF GFNQTTPLGL NQLTPYQIIQ  60
IQNQLNQRRS TTISNLSPKP VPMKNMTAQK LYRGVRQRHW GKWVAEIRLP KNRTRLWLGT  120
FDTAEEAAKA YDQAAYKLRG EVARLNFPHM RREYGDGGGD SSFKPLHPSV EAKLEAICQS  180
LVKTEDVDLP CSETELFLPP KAEYQKIEFG SLRADDNSFS DESQVESSSP ESGITTTFLG  240
FSDSRFDEIG NFVLEKFPSV EIDWDAITKL SES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-2190148160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1892600.0AC189260.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB021M22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013707502.11e-176PREDICTED: ethylene-responsive transcription factor ERF060-like
SwissprotO656651e-152ERF60_ARATH; Ethylene-responsive transcription factor ERF060
TrEMBLA0A0D3DIA21e-176A0A0D3DIA2_BRAOL; Uncharacterized protein
STRINGBra011833.1-P1e-174(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-122ERF family protein